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SSEP: Secondary structural elements of proteins

Shanthi, V and Selvarani, P and Kumar, Kiran Ch and Mohire, CS and Sekar, K (2003) SSEP: Secondary structural elements of proteins. In: Nucleic Acids Research, 31 (13). pp. 3404-3405.

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Abstract

SSEP is a comprehensive resource for accessing information related to the secondary structural elements present in the 25 and 90% non-redundant protein chains. The database contains 1771 protein chains from 1670 protein structures and 6182 protein chains from 5425 protein structures in 25 and 90% non-redundant protein chains, respectively. The current version provides information about the $\alpha$-helical segments and $\beta$-strand fragments of varying lengths. In addition, it also contains the information about $3_{10}$-helix, $\beta$- and v-turns and hairpin loops. The free graphics program RASMOL has been interfaced with the search engine to visualize the three-dimensional structures of the user queried secondary structural fragment. The database is updated regularly and is available through Bioinformatics web server at http://cluster.physics.iisc.ernet.in/ssep/ or http://144.16.71.148/ssep/.

Item Type: Journal Article
Additional Information: Copyright of this article belongs to Oxford University Press.
Department/Centre: Division of Information Sciences > Supercomputer Education & Research Centre
Division of Information Sciences > BioInformatics Centre
Date Deposited: 15 Oct 2007
Last Modified: 19 Sep 2010 04:40
URI: http://eprints.iisc.ernet.in/id/eprint/12290

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