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Ghosh, Arindam and Bansal, Manju (2001) Structural features of B-DNA dodecamer crystal structures: Influence of crystal packing versus base sequence. In: Satellite Symposium on Structural Biology and Molecular Recognition, SEP 27-29, 1999, Calcutta, India.
Kumar, Aditya and Bansal, Manju (2012) Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 423-431.
Kumar, Prasun and Bansal, Manju (2012) HELANAL-Plus: a web server for analysis of helix geometry in protein structures. In: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 30 (6). pp. 773-783.
Morey, Czuee and Mookherjee, Sushmita and Rajasekaran, Ganesan and Bansal, Manju (2011) DNA Free Energy-Based Promoter Prediction and Comparative Analysis of Arabidopsis and Rice Genomes. In: Plant Physiology, 156 (3). pp. 1300-1315.
Marathe, Arvind and Bansal, Manju (2011) An ensemble of B-DNA dinucleotide geometries lead to characteristic nucleosomal DNA structure and provide plasticity required for gene expression. In: BMC STRUCTURAL BIOLOGY, 11 .
Jena, NR and Bansal, Manju (2011) Mutagenicity associated with O6-methylguanine-DNA damage and mechanism of nucleotide flipping by AGT during repair. In: Physical Biology, 8 (4).
Rangannan, Vetriselvi and Bansal, Manju (2010) High-quality annotation of promoter regions for 913 bacterial genomes. In: Bioinformatics, 26 (24). pp. 3043-3050.
Marathe, Arvind and Bansal, Manju (2010) The 5-Methyl Group in Thymine Dynamically Influences the Structure of A-Tracts in DNA at the Local and Global Level. In: Journal of Physical Chemistry B, 114 (16). pp. 5534-5546.
Rangannan, Vetriselvi and Bansal, Manju (2009) Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition. In: Molecular BioSystems, 5 (12). pp. 1758-1769.
Marathe, Arvind and Bansal, Manju (2009) Structural Polymorphism of the Nucleosomal DNA and Implications for Protein Binding. In: Journal of Biomolecular Structure & Dynamics, 26 (6). pp. 925-926.
Marathe, Arvind and Karandur, Deepti and Bansal, Manju (2009) Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs. In: BMC Structural Biology, 9 (24).
Rangannan, Vetriselvi and Bansal, Manju (2007) Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability. In: Journal of Biosciences, 32 (5). pp. 871-881.
Mukherjee, Shayantani and Bansal, Manju and Bhattacharyya, Dhananjay (2006) Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis. In: Journal of Computer-Aided Molecular Design, 20 (10-11). pp. 629-645.
Madhumalar, A and Bansal, Manju (2005) Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis. In: Journal of Biomolecular Structure & Dynamics, 23 (1). pp. 13-27.
Kanhere, Aditi and Bansal, Manju (2005) Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes. In: Nucleic Acids Research, 33 (10). pp. 3165-3175.
Bhattacharjee, Arnab and Bansal, Manju (2005) Collagen Structure: The Madras Triple Helix and the Current Scenario. In: International Union of Biochemistry and Molecular Biology: Life, 57 (3). pp. 161-72.
Kanhere, Aditi and Bansal, Manju (2005) A novel method for prokaryotic promoter prediction based on DNA stability. In: BMC bioinformatics, 6 (1). pp. 1-10.
Bansal, Manju (2003) DNA structure: Revisiting the Watson–Crick double helix. In: Current Science, 85 (11). pp. 1556-1563.
Madhumalar, A and Bansal, Manju (2003) Structural Insights into the Effect of Hydration and Ions on A-Tract DNA: A Molecular Dynamics Study. In: The Biophysical Journal, 85 (3). pp. 1805-1816.
Kanhere, Aditi and Bansal, Manju (2003) An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data. In: Nucleic Acids Research, 31 (10). pp. 2647-2658.
Paul, Bindu D and Kanhere, Aditi and Chakraborty, Atanu and Bansal, Manju and Nagaraja, Valakunja (2003) Identification of the Domains for DNA Binding and Transactivation Function of C Protein from Bacteriophage Mu. In: Proteins: Structure, Function, and Genetics, 52 (2). pp. 272-282.
Chowdhury, Shibasish and Bansal, Manju (2001) Modelling studies on neurodegenerative disease causing triplet repeat sequences d(CGG/GCC) and d(CAG/CTG): Duplexes vs Quadruplexes. In: Journal of Biosciences, 26 (5). pp. 649-665.
Chowdhury, Shibasish and Bansal, Manju (2001) G-quadruplex structure can be stable with only some coordination sites being occupied by cations: A six-nanosecond molecular dynamics study. In: Journal Of Physical Chemistry B, 105 (31). pp. 7572-7578.
Bansal, Manju (2001) The Madras Triple Helix:Origins and Current Status. In: Resonance, 6 . pp. 38-47.
Chowdhury, Shibasish and Bansal, Manju (2000) Effect of coordinated ions on structure and flexibility of parallel G-quadruplexes: A molecular dynamics study. In: Journal of Biomolecular Structure & Dynamics, 18 (1). pp. 11-28.
Chowdhury, Shibasish and Bansal, Manju (2000) Effect of coordinated ions on structure and flexiblity of parallel G-quandruplexes: a molecular dynamics study. In: Journal of Biomolecular Structure & Dynamics, 18 (1). pp. 11-28.
Bansal, Manju and Kumar, Sandeep and Velavan, R (2000) HELANAL: A Program to Characterize Helix Geometry in Proteins. In: Journal of Biomolecular Structure and Dynamics, 17 (5). pp. 811-819.
Bansal, Manju and Sandeep Kumar, * and Velavan, R (2000) HELANAL: A program to characterise helix geometry in proteins,. In: Journal of Biomolecular Structure & Dynamics, 17 (5). pp. 769-932.
Ghosh, Anirban and Bansal, Manju (1999) C-H..O Hydrogen Bonds in Minor Groove of A-tracts in DNA Double Helices. In: Journal of Molecular Biology, 294 (5). pp. 1149-1158.
Ghosh, Anirban and Bansal, Manju (1999) Three-centre C-H...O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures. In: Acta Crystallographica Section D-Biological Crystallography, 55 (12). pp. 2005-2012.
Gu, Jiande and Leszczynski, Jerzy and Bansal, Manju (1999) A new insight into the structure and stability of Hoogsteen hydrogen-bonded G-tetrad: an ab initio SCF study. In: Chemical Physics Letters, 311 (3-4). pp. 209-214.
Bansal, Manju (1999) DNA structure: Yet another avatar? In: Current Science, 76 (9). pp. 1178-1181.
Ravi Kiran, M and Bansal, Manju (1998) Molecular dynamics simulations on parallel and antiparallel C.G*G triplexes. In: Journal of Biomolecular Structure & Dynamics, 16 (3). pp. 511-526.
Kumar, Sandeep and Bansal, Manju (1998) Geometrical and Sequence Characteristics of $\alpha$-Helices in Globular Proteins. In: Biophysical Journal, 75 (4). pp. 1935-1944.
Kumar, Sandeep and Bansal, Manju (1996) Structural and Sequence Characteristics of Long alpha Helices in Globular Proteins. In: Biophysical Journal., 71 (03). pp. 1574-1586.
Bansal, Manju and Bhattacharyya, D and Ravi, B (1995) NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures. In: CABIOS / Computer Applications in the Biosciences, 11 (3). pp. 281-287.
Anachi, RB and Bansal, Manju and Easwaran, KRK and Namboodri, K and Gaber, BP (1995) Molecular Modeling Studies on Amphotericin B and its Complex with Phospholipid,. In: Journal of Biomolecular Structure & Dynamics, 12 (5). pp. 957-970.
Mohanty, Debasisa and Bansal, Manju (1994) Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Pairing in d(G4TnG4),. In: Biopolymers, 34 (9). pp. 1187-1211.
Nagaich, Akhilesh K. and Bhattacharyya, Dhanaqjay and Brahmachari, Samir K and Bansal, Manju (1994) CA\TG Sequence at the 5'end of Oligo(A)-tracts Strongly Modulates DNA Curvature. In: Journal of Biological Chemistry , 269 (10). 7824-7833. .
Nagaich, AK and Bhattacharyya, D and Brahmachari, SK and Bansal, Manju (1994) CA/TG sequence at the 5' end of oligo(A)-tracts strongly modulates DNA curvature. In: Journal of Biological Chemistry, 269 (10). pp. 7824-7833.
Mohanty, Debasisa and Bansal, Manju (1994) Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Ppairing in $d(G_4T_nG_4)$. In: Biopolymers, 34 (9). pp. 1187-1211.
Mohanty, D and Bansal, Manju (1993) Conformational Polymorphism in G-tetraplex Structures: Strand Reversal by Base Flipover or Sugar Flipover. In: Nucleic Acids Research, 21 (8). pp. 1767-1774.
Mohanty, Debasisa and Bansal, Manju (1993) Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover. In: Nucleic Acids Research, 21 (8). pp. 1767-1774.
Balagurumoorthy, P and Brahmachari, Samir K and Mohanty, Debasisa and Bansal, Manju and Sasisekharan, V (1992) Hairpin and parallel quartet structures for telomeric sequences. In: Nucleic Acids Research, 20 (15). pp. 4061-4067.
Heinemann, U and Alings, C and Bansal, Manju (1992) Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA. In: The EMBO Journal, 11 (5). 1931-1939 .
Bhattacharyya, Dhananjay and Bansal, Manju (1992) Groove width and depth of B-DNA structures depend on local variation in slide. In: Journal of Biomolecular Structure & Dynamics, 10 (1). pp. 213-226.
Bhattacharyya, D and Bansal, Manju (1989) A self-consistent formulation for analysis and generation of non-uniform DNA structure. In: Journal of Biomolecular Structure & Dynamics, 6 (4). pp. 635-653.
Bansal, Manju and Pattabiraman, N (1989) Molecular mechanics studies on poly(purine) poly(pyrimidine) sequences in DNA: Polymorphism and local variability. In: Biopolymers, 28 (2). pp. 531-548.
Bhattacharyya, Dhananjay and Bansal, Manju (1988) Why do DNA helical models exhibit wedge rolls? A mathematical rationale. In: Current Science, 57 (21). pp. 1159-1162.
Bhattacharya, D and Bansal, Manju (1988) A general procedure for generation of curved DNA molecules. In: Journal of Biomolecular Structure & Dynamics, 6 (1). pp. 93-104.
Bhattacharyya, Dhananjoy and Bansal, Manju (1987) Energetics of left and right handed models of DNA. In: Journal of Biomolecular Structure & Dynamics, 4 (6). pp. 1027-1040.
Bryan, RK and Bansal, Manju and Folkhard, , W and Nave, C and Marvin , DA (1983) Maximum-entropy calculation of the electron density at 4 A resolution of Pf1 filamentous bacteriophage. In: Proceedings Of The National Academy Of Sciences of the United States of America-Biological Sciences , 80 (15). 4728-4731 .
Ramaswamy, N and Bansal, Manju and Gupta, Goutam and Sasisekharan, V (1983) Structure of D-DNA: 8-fold or 7-fold helix? In: The EMBO Journal, 2 (9). pp. 1557-1560.
Sasisekharan, V and Bansal, Manju and Gupta, Goutam (1981) A need for re-examination of the fibre diffraction data of A-DNA. In: Biochemical and Biophysical Research Communications, 102 (3). pp. 1087-1095.
Sasisekharan, V and Gupta, Goutam and Bansal, Manju (1981) Sequence-dependent molecular conformation of polynucleotides: right and left-handed helices. In: International Journal of Biological Macromolecules, 3 (1). pp. 2-8.
Bansal, Manju and Gupta, Goutam (1981) Structure factor calculations of various DNA duplexes. In: International Journal of Quantum Chemistry, 20 (2). pp. 407-417.
Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) Polymorphism and conformational flexibility of DNA: right and left handed duplexes. In: International Journal of Biological Macromolecules, 2 (6). pp. 368-380.
Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) Reversal of handedness in DNA: A stable link between RU and LZ helices. In: Biochemical and Biophysical Research Communications, 97 (4). pp. 1258-1267.
Gupta, Goutam and Bansal, Manju and Sasisekharan, V (1980) A novel Z-structure for poly d(GC).poly d(GC). In: Biochemical and Biophysical Research Communications, 95 (2). pp. 728-733.
Bansal, Manju and Brahmachari, Samir K and Sasisekharan, V (1979) Structural Investigations on Poly(4-hydroxy-L-proline). 1. Theoretical Studies. In: Macromolecules, 12 (1). pp. 19-23.
Brahmachari, Samir K and Bansal, Manju and Ananthanarayanan, VS and Sasisekharan , V (1979) Structural Investigations on Poly(4-hydroxy-L-proline). 2. Physicochemical Studies. In: Macromolecules, 12 (1). pp. 23-28.
Bansal, Manju and Jayaram, B and Mittal, Aditya (2012) Nucleic acids in disease and disorder: Understanding the language of life emerging from the `ABC' of DNA. In: JOURNAL OF BIOSCIENCES, 37 (3). pp. 375-378.
Jena, Nihar Ranjan and Bansal, Manju (2011) How does AGT detect and repair O6-methyguanine-DNA damage. In: American Chemical Society, National Meeting, 242 .
Marathe, Arvind and Bansal, Manju (2011) Intrinsic structural variability of DNA allows multiple genomic encoding for nucleosomes Comment on ``Cracking the chromatin code: Precise rule of nucleosome positioning'' by EN Trifonov. In: Physics of Life Reviews, 8 (1). pp. 67-68.
Majumder, K and Mishra, RK and Bansal, Manju and Brahmachari, SK (1989) Sequence criteria for Z-DNA formation: studies on poly d(ACGT). In: Nucleic Acids Research, 17 (1). p. 450.
Dickerson, RE and Bansal, Manju (1989) Definitions and nomenclature of nucleic acid structure parameters. In: EMBO Journal, 8 (1). pp. 1-4.
